Bibliothèque d'échantillons

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Échantillons par catégories : Autre

Numéro d'identification de l'échantillon Titre Créateur
Échantillons
1find number of Ns in each sequence from a fasta fileChristophe Klopp
Input : one argument : fasta file name
Output : one line per sequence with sequence name and number of Ns
2fastq_1-0_to_1-5nicolas allias
Convert a fastq from Sanger to Illumina's format (quality coded on ASCII+33 -> ASCII+64)
Just inverse the "tr" statement to convert from 1.5 (illumina) to 1.0 (sanger)
Requires a 4-lines formatted fastq: no line wrap in sequence nor quality.
3fastq correcternicolas allias
Unwrap lines of sequence and quality, remove bad formatted reads (listed in a log file) and fix coherence sequence length - quality length (truncate the longer one).
Change quality encoding, verifications and many other stuffs may be written in write_current() fonction
4testCLocal GForge Admin
test langage C
5test 1Local GForge Admin
C test for the first time
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